Ben Best (bbest@nceas.ucsb.eduas)
2014-05-14
US West Coast
Halpern et al (in press) PLoS ONE
Brazil
Elfes et al (2014) PLoS ONE
Flower
Map
free, cross-platform, open source, web based
shiny web application, ggplot2 figures, dplyr data manipulation
ohicore, ohigui, ohibaltic
For example, calculate Baltic Health Index every year using scenarios bhi_1980,..., bhi_2014 as folders. (Jasper's suggestion)
library(ohicore)
dir_scenarios = '~/ohibaltic/scenarios'
for (yr in 1980:2014){
scenario = paste0('bhi_', yr)
setwd(file.path(dir_scenarios, scenario))
conf = Conf('conf')
layers = Layers('layers.csv', 'layers')
scores = CalculateAll(conf, layers)
write.csv(scores, 'scores.csv')
}
ohigui into ohicore.Extract average regional pressures from HELCOM Holistic Assessment of Ecosystem Health Status (HOLAS) and Baltic Sea Pressure/ Impact Indices (BSPI/BSII), supplement with Halpern et al Cumulative Impacts.
Ojaveer, H., and Eero, M. (2011). Methodological Challenges in Assessing the Environmental Status of a Marine Ecosystem: Case Study of the Baltic Sea. PLoS ONE.
Carstensen, J., Andersen, J.H., Gustafsson, B.G., and Conley, D.J. (2014). Deoxygenation of the Baltic Sea during the last century. PNAS.